tadr, when you say you put the sensor bar underneath the bottom sill, are you saying that the sensor is buried in the wall? Is the sensor sensing through the window sill? What material is the sill made of?
I am looking at building a house in a year, and I know I too will face this issue.
I took a slightly different approach. I didn't want to drill my windows. I used the larger, wide-gap bar-magnet style sensors (I forget which one exactly, but I can look it up) designed to span longer distances (~1.5-2", I believe). I put the sensor bar underneath the bottom sill. I then super-glued the magnet bar underneath the bottom sash.
I'm not 100% sure, but this may have been the sensor I used: http://www.mcmelectr...gn=ConfirmEmail
Pella is a very hard one to narrow down, they tend to change window designs and like almost every couple of years.
If warranty is not a concern, 3/8" recessed contacts and rare earth donut mags would be my suggestion.